The directory walk deliberately follows an in-root symlink whose target
lives outside the repo root (the standard Dota custom-game layout, where
`game/` and `content/` link into the SDK tree) and enumerates the files
under it. But the read path then rejected every one of them via the
strict symlink-escape guard, logging `Path traversal blocked in batch
reader` and indexing nothing — discovery and the reader disagreed.
Add an opt-in `allowSymlinkEscape` to validatePathWithinRoot that waives
only the realpath-escape rejection (the lexical `../` guard still
applies) and pass it at the three indexing read sites (batch reader,
indexFile, indexFileWithContent). The content-serving sinks
(ContextBuilder, MCP tools) keep the strict guard, so this stays inside
the #527 model: indexing now follows the symlink, getCode still refuses
to serve out-of-root contents.
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
The extension → language table was hardcoded, so a codebase using a
non-standard extension for a supported language (e.g. `.dota_lua` for Lua)
had those files silently skipped — no way to opt them in short of patching
the source.
Add an opt-in, project-scoped `codegraph.json` at the repo root:
{ "extensions": { ".dota_lua": "lua", ".tpl": "php" } }
Mappings merge on top of the built-in defaults and take precedence (so a
built-in can be re-pointed, e.g. `.h` → `cpp`). Absent or malformed config
is the zero-config default — byte-identical to prior behavior; an invalid
target language or unparseable file is warned-and-skipped, never fatal.
Implementation:
- New `src/project-config.ts` — `loadExtensionOverrides(rootDir)`, validated
against `isLanguageSupported`, mtime-cached per root.
- `detectLanguage` / `isSourceFile` gain an optional `overrides` arg
(omitting it is the existing behavior).
- Overrides threaded per-operation through every extraction call site
(scan/walk gates, git change-detection, grammar selection, extraction,
the file watcher), resolved from the project root — no process-global
state, so the multi-project daemon stays isolated. The parse worker
receives the resolved language in its message.
Tests: 13 new cases (unit, loader validation/normalization/caching, and a
full-index integration proving a custom-extension file is extracted while
the zero-config path indexes nothing). Worker path smoke-tested via the
built CLI.
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
C/C++ polymorphism is the function pointer: a struct fn-pointer field, concrete
functions registered into it through a table (`{"add", cmd_add}`), a designated
initializer (`.handler = on_open`), or an assignment, then dispatched indirectly
(`p->fn(argv)`). Static extraction captures neither the registration→field
binding nor the indirect call, so the dispatcher→handler edge was missing — git's
run_builtin looked like it called nothing, a vtable's implementations had no
callers, and the hook_demo.c in the issue was unreachable.
Add a resolution-layer synthesizer keyed by (struct type, fn-pointer field). It
reads source (the established Celery/Sidekiq/Spring pattern — C extraction has no
struct fields or indirect-call edges to build on) in passes: collect fn-pointer
typedefs, parse struct field layouts, collect registrations (positional matched
by field index, designated, and assignment), propagate field←field assignments
(so a generic hook slot reassigned from a registry — the hook_demo.c
`h->func = found->fn` shape — inherits the registry field's handlers), then link
each indirect dispatch site to the registered handlers. Receiver type resolves
from the enclosing function's params/locals, falling back to a field name unique
to one struct. Covers both the command-table idiom (git, redis) and the
ops-struct/vtable idiom (curl content-encoders, protocol handlers).
Pure edge synthesis (no node growth); high precision via the (struct, field) key.
Validated: git 502 edges (run_builtin→cmd_* plus git_hash_algo/archiver/reftable
vtables), redis 357 (dictType.hashFunction, connection + reply-object vtables),
curl 478 (Curl_cwtype.do_init → deflate/gzip/brotli/zstd); 0 non-function targets
on all three; node-stable; 0 on the lua control (its {name,fn} tables register
into the Lua VM, with no C indirect call to bridge). Full suite 1665 pass.
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Lombok generates getters/setters, builder(), equals/hashCode/toString, and
the @Slf4j log field at compile time, so they never appear in the source AST.
Static extraction missed them entirely, so a bean.getName() / User.builder() /
log.info() call resolved to nothing and call-chain analysis broke silently —
the agent would conclude the method didn't exist.
Add a synthesizeMembers hook on LanguageExtractor, called at the end of class
extraction (class still on the scope stack, real members already extracted), and
a Java implementation that synthesizes the mechanical members for @Getter,
@Setter, @Data, @Value, @Builder/@SuperBuilder, @ToString, @EqualsAndHashCode,
and the @Log* family. Each node is anchored on the field/class name-token leaf
(so it pulls in no spurious value-reference scope), marked with a `lombok`
decorator and a docstring naming the generating annotation, and never overrides
a member the source already declares. Methods and fields are deduped separately
since they're distinct namespaces in Java (a boolean field `isRunning` and its
generated getter `isRunning()` coexist).
Deliberately not synthesized: constructors (new X() already links via
instantiates, and overloaded @NoArgs/@AllArgs/@RequiredArgs ctors would collide
on a synthetic node id), fluent builder setters, and @Accessors(fluent=true).
Validated on eladmin (274 Java files, Lombok-heavy): 100% accessor precision
(878/878 map to a real field), 722 previously-broken calls now resolve;
spring-petclinic (no Lombok) control synthesizes nothing.
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
MCP tool results used Markdown ATX headings (##/###/####) for section
headers — the status summary, each search hit, every file section in an
exploration — which Markdown-rendering clients (e.g. the Claude Code
VSCode extension) blow up to H1–H4 font size, filling the transcript with
oversized lines (worst on search/explore, where the noise scales with
result count). Swap them all for bold labels, which render at body size
while keeping the same structure. CLI/TTY output (ContextBuilder) is
unchanged — the issue notes it's fine.
The format is parse-coupled, so kept in sync:
- The explore truncation boundary and the offload chunker
(reasoning/reasoner.ts) both key off the per-file header, now a unique
`**`-prefixed marker emitted via a shared fileSectionHeader() helper.
- Updated the offload strip regexes and switched the opt-in report-style
prompt off ATX headings (same client, same rendering issue).
- Updated test helpers (sectionFor, sourcedFiles, the callers
section-boundary scan) that scanned the old markers.
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
On a very large repo (the report is a ~93k-file / 5.7GB-DB Java monorepo) the
first MCP `tools/call` after a fresh `serve --mcp` could hang for 10+ minutes
with zero output, and with the liveness watchdog on, the daemon was SIGKILLed
mid-query instead. Root cause: the post-open catch-up reconcile that the first
tool call is gated on does ~2*N synchronous `fs.existsSync`/`fs.statSync` calls
plus a load-all-files query in two non-yielding loops. On a huge repo that wedges
the event loop for minutes, which (a) trips the 60s watchdog (it SIGKILLs a
process whose loop stops turning) and (b) blocks the first call the whole time.
Two complementary fixes:
- Make the reconcile yield. `ExtractionOrchestrator.sync()` now uses the
yielding `scanDirectoryAsync`, and both O(files) reconcile loops
`await setImmediate` every SYNC_RECONCILE_YIELD_INTERVAL (1000) files. The loop
can no longer wedge the main thread, so the watchdog stays fed and the socket /
any concurrent read stays responsive while a big reconcile runs. Results are
unchanged — only yield points are added.
- Time-box the catch-up gate. The first `tools/call` now waits on the reconcile
for at most CODEGRAPH_CATCHUP_GATE_TIMEOUT_MS (default 3000ms), then serves and
lets the reconcile finish in the background (which now yields, so the served
call runs concurrently). `=0` restores the old unbounded wait. On a normal repo
the reconcile finishes well under the budget, so behavior is unchanged.
Tests: adds two time-box cases to mcp-catchup-gate (serves promptly when the
reconcile runs long; `=0` restores the unbounded wait). Full suite green
(1655 passed). Validated end-to-end through the real daemon: first call returns
at the ~3s time-box instead of waiting an injected 8s reconcile; no-delay control
unchanged; `=0` opt-out waits the full reconcile.
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Change detection's git fast path (collectGitStatus) consumed `git status`
output with only an isSourceFile filter, on the assumption that git already
omits ignored paths. It doesn't: gitignore is a no-op for *tracked* files, and
the built-in default excludes (vendor/, node_modules/) aren't gitignore at all.
So a tracked file inside a committed dependency dir, or under a .gitignored
dir, surfaced as a change the full index never tracks — `codegraph status`
reported phantom pending changes that `sync` (a filtered filesystem reconcile)
never cleared, and the public getChangedFiles() API returned the same wrong
list.
Apply buildDefaultIgnore(repoDir) per recursion level, matching repo-relative
paths — structurally equivalent to the full-index path's ScopeIgnore (each
embedded repo judged by its own rules) with no extra git subprocess calls.
Deletions stay unfiltered: getChangedFiles acts on one only when the path is
already tracked in the DB, where removal is always correct, and that lets a
newly-excluded dir's stale rows clean themselves up.
Unblocks #699 (an .ignore overlay inherits this leak unless change detection
consults the same matcher as enumeration).
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
- Benchmark table reordered to lead with tool calls, time, and file reads (the universal wins); cost and tokens moved right with a note that savings are scale-dependent, not a headline claim
- README/introduction/quickstart/installation messaging updated to "surgical context · fewer tool calls · faster answers" framing, dropping the "16% cheaper" headline
- Node engine floor raised from 18 to 20 in CLAUDE.md, package.json description updated
- `codegraph init` now creates and indexes in one step; the `-i` flag is retired (still accepted as a no-op)
- CLI reference expanded with new commands: `explore`, `node`, `unlock`, `daemon`, `telemetry`, `upgrade`, `version`, `help`
- MCP server docs clarified: single `codegraph_explore` tool exposed by default, others unlisted but re-enableable via `CODEGRAPH_MCP_TOOLS`
- Language support adds Objective-C, Astro, and R; framework routes adds Play, Vue Router/Nuxt, and Astro
- API reference documents lower-level exports and embedding requirements (Node 22.5+ for `node:sqlite`)
- Troubleshooting adds WSL/Windows dual-checkout guidance
- How-it-works updated: SQLite backend is now Node's built-in `node:sqlite` in WAL mode, not better-sqlite3/WASM
A C++ class/struct annotated with an export/visibility macro —
`class MYLIB_EXPORT Foo : public Bar { … }` — makes tree-sitter read
`class MYLIB_EXPORT` as an elaborated type specifier and the whole declaration
as a `function_definition` named after the class, spanning the entire body. That
phantom `function` polluted callers/impact/blast-radius and skewed kind stats.
Detect the misparse structurally in cppExtractor.isMisparsedFunction — a
function_definition whose `type` field is a *bodyless* class/struct specifier
(the elaborated-type macro) and whose declarator is not a function_declarator —
and drop the bogus node, matching how macro-prefixed C prototypes are already
handled. The body is mangled by the same misparse and is unrecoverable. Precise
enough to leave genuine code alone: `struct P { int x; } makeP() {}` (real
inline-defined return type, has a field list) and `class Foo f() {}` (elaborated
return type on a real function, has a function_declarator) are untouched. The
leading macro alone triggers the misparse; a base clause is not required.
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
A worktree of a submodule points its `.git` into
`.git/modules/<module>/worktrees/<name>`, but `classifyGitDir` only matched
the top-level `.git/worktrees/` shape — so submodule worktrees fell through
to "embedded" and every symbol they shared with the real submodule checkout
got indexed twice (one report: ~28% of the index was duplicates, inflating
both query results and the DB). Broaden the worktree detector to allow the
optional `modules/<module>` segment. The submodule's own checkout
(`.git/modules/<module>`, no `worktrees/`) is unaffected and stays indexed as
distinct code.
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
When the indexed root is a directory an enclosing git repo ignores,
`git ls-files --directory` collapses the whole cwd to a single literal
`./` entry. That sentinel reached the `ignore` matcher, which rejects it
("path should be a `path.relative()`d string, but got "./""), aborting
buildScopeIgnore — the one ignore-building call in FileWatcher.start().
So the MCP daemon's startWatching() threw, was caught as "Failed to open
project", and auto-sync never started: the index silently went stale
until a manual `codegraph sync` (CODEGRAPH_NO_DAEMON=1 was the only
workaround).
Filter the `./`/`.` self-entry wherever we consume `--directory` output
(listIgnoredDirs + the untracked-dir loop in discoverEmbeddedRepoRoots).
Semantically correct, not just a crash guard: `./` means "the whole cwd",
never a nested repo to recurse into.
Not platform-specific (reported on Codex/Windows, reproduced on macOS):
the trigger is git state, not the OS.
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
A long-lived `serve --mcp` process opens `.codegraph/codegraph.db` and holds
the fd for its whole life. If `.codegraph/` is removed and recreated AT THE
SAME PATH while it runs — `git worktree remove <p>` + re-add, or `rm -rf
.codegraph` + `codegraph init` — the held fd points at the now-unlinked inode
and can never see the new index. The server serves the pre-removal snapshot
(renamed/removed symbols still "live", new ones missing); `codegraph sync`
can't refresh it and the CLI (a fresh process) diverges. Only a restart fixed
it — and because the daemon registry is keyed by path, a same-path recreate
routes new clients straight back to the same stale daemon, so the fix has to
self-heal inside the running process.
- DatabaseConnection records the DB file's (dev, ino) at open and exposes
isReplacedOnDisk() — a different inode now at the same path. POSIX-gated:
Windows can't unlink an open file and its st_ino is unreliable, so it never
fires there.
- CodeGraph.reopenIfReplaced() opens the live file first, then swaps the
connection + query layers IN PLACE (via the new wireLayers() helper), so
every holder of the instance (the daemon's default project, cached
projectPath connections) heals without a restart. Closing the dead handle
also frees the leaked db/-wal/-shm fds pinning the unlinked inode.
- ToolHandler.getCodeGraph calls it (freshen) before serving — one stat() per
call, a no-op unless the inode actually changed, never throws into a tool.
Tests cover isReplacedOnDisk (unchanged / replaced / absent / Windows-gated)
and an end-to-end reopen that heals a held instance after a same-path recreate
(asserts the pre-heal staleness too). Validated on macOS with a dist probe of
the raw instance and the MCP serving path; full suite green.
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
A long-lived MCP server (the shared daemon) cached both the project handle
(projectCache) and the worktree-mismatch verdict (worktreeMismatchCache) for
its whole lifetime — cleared only on shutdown — keyed off the input path and
never re-checked. So a worktree path first resolved BEFORE it had its own
.codegraph/ — when the walk-up reached the main checkout — stayed pinned to
the main checkout: every query kept hitting the wrong index and every result
carried a false "this index belongs to a different git working tree" warning,
until the server restarted. The CLI was correct (fresh process per run);
re-indexing didn't help.
- getCodeGraph: re-resolve findNearestCodeGraphRoot on every call (cheap stat
walk, no git, no reopen) and cache the open DB by RESOLVED ROOT only. Drops
the input-path short-circuit that pinned the first resolution, and the
double-keying (which also double-closed each instance in closeAll()).
- worktreeMismatchFor: key the verdict on (startPath, indexRoot) so a changed
index root recomputes instead of serving the stale "borrowed the parent's
index" verdict.
Adds a regression test that fails pre-fix (the stale warning survives the
index-root flip); the existing "no further git spawn" caching test still
passes. The query-staleness half (a second project opened through the handler)
isn't unit-testable under vitest, so it was validated with a dist A/B.
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
`codegraph install` no longer indexes the current directory — it wires up agents
only, and building a project's graph is always the explicit `codegraph init` /
`index`. Removes the global-vs-local inconsistency (a local install silently
indexed, a global one didn't) and the docs/behavior mismatch (#826). README
updated to match; the stale `init --index` note (indexing is default now) fixed.
Adds an opt-in Claude Code front-load hook: a `UserPromptSubmit` hook that runs
the new hidden `codegraph prompt-hook`, which injects codegraph_explore context
for structural ("how / where / trace / impact") prompts so the agent answers
from the graph instead of grepping to rebuild it. Prompted at install
(default-yes; Claude-only — the only agent with prompt hooks), removed on
uninstall, and `codegraph upgrade` self-heals it onto an already-configured
global Claude install. Strictly additive + degradable: non-structural prompts,
un-indexed projects, and any failure are silent no-ops. Disable without
uninstalling via CODEGRAPH_NO_PROMPT_HOOK=1.
7 new installer-targets contract tests (write / idempotent / opt-out round-trip /
sibling-preserved / uninstall / legacy-independent). Full suite green.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
PR #927 (merged to main) fixed `sync()` dropping incoming cross-file
calls/references edges on callee re-index but did not add a CHANGELOG
entry; add it to [Unreleased] so it lands in the next release notes.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
`storeExtractionResult` deletes a re-indexed file's nodes via `deleteFile`,
which cascades through `edges.FK ... ON DELETE CASCADE` to delete every edge
whose source OR target is one of those nodes. Edges whose source is in the
re-indexed file are re-emitted by the extractor, but edges whose source is in
a *different* (unchanged) file are not — they are silently dropped. This is
issue #899: re-indexing a callee file severs `calls`/`references` edges from
callers that import it via module-attribute access (`pkg.mod.fn(...)`), so
`codegraph callers fn` reports 0 callers for functions that have real call
sites. A docstring-only edit on the callee is sufficient to trigger it.
The bug affects every incremental path that routes through `sync()` /
`indexFile()`: `codegraph sync`, the file-watcher auto-sync (which calls
`sync()`), and the git sync hooks. `codegraph index` was already fixed by
#894 (it now clears-then-rebuilds, so it's a full re-extraction, not
incremental). `sync` remains the fast incremental path and still has the bug.
Fix: before the delete, snapshot incoming cross-file edges paired with the
target node's (name, kind). After re-inserting the file's nodes + same-file
edges, re-insert the snapshot — re-resolving each edge's target to the
re-indexed node's NEW id by (filePath, kind, name). Node ids are
`sha256(filePath:kind:name:line)`, so any line shift in the callee file (e.g.
a docstring-only edit above the symbol) changes every target id and a naive
re-insert by old id would drop them all. Matching by (kind, name) is stable
across line shifts; if the symbol was renamed/removed, no match is found and
the edge stays dropped (correct). `insertEdges` still filters to endpoints
that exist, so edges whose caller (source) was deleted are also dropped.
Regression tests in `__tests__/sync.test.ts` model the RAGFlow production
case: a `pkg/mod.py` with two callees, both called from `test/test_callers.py`
via `mod.<fn>(...)`. The first test confirms a docstring-only edit that shifts
the second callee's line preserves both incoming edges. The second test
confirms renaming a callee correctly drops its old incoming edge (no phantom
preservation against a non-existent symbol).
forwardRef/memo/styled-wrapped component consts were classified as plain
`constant` nodes (the initializer is a call/tagged-template, not a bare arrow),
so the JSX-render synthesizer and component resolution skipped them — callers
and impact returned empty for the entire shadcn/ui-style UI layer. Recognize
them in the tree-sitter extractor as `component` nodes (correct body range +
callee capture), PascalCase-gated so a memoization util stays a constant.
Separately, the `react` resolver's `languages` lacked 'tsx'/'jsx', so its
`extract()` never ran on JSX files — React Router `<Route>`/createBrowserRouter
and Next.js page routes (which only live in .tsx/.jsx) were never indexed. Add
'tsx'/'jsx' and make `extract()` route-only: the component/hook regex it carried
duplicated tree-sitter nodes (a `useAuth` became two `function` nodes) and is
fully superseded by the extractor now.
Validated before/after: taxonomy 0->99 component nodes (35 w/ callers) + 1->15
routes; radix 0->262 components (80 w/ callers); cypress-realworld-app 45->52
routes (7 <Route> tags from .tsx); non-React control unchanged; node count
stable. New tests: react-hoc-component.test.ts + a route e2e in
frameworks-integration.test.ts.
Root-caused by @maxmilian (#846); reported by @Arlandaren.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Discovery across 15 independent diverse repos + GitHub-wide code search found
the strict barrel-namespace shape (`import * as M from './api'` -> `M[runtimeKey]`
-> `new` -> `.run()`) in exactly 2 repos: trezor-suite and OneKey hardware-js-sdk.
But OneKey is a @trezor/connect fork (same findMethod/MethodConstructor skeleton),
so it's 2 indexable repos but one design lineage = effectively n=1. Every
independent registry-by-runtime-key found is a different shape the trezor-tuned
synth wouldn't catch (n8n dynamic-import+DI, polkadot array-of-constructors,
ccxt object-literal [already covered], typeorm/xrpl switch). The synth is the
hard tier (cross-file barrel re-export enumeration + computed index + camel/Pascal
transform + entry-method fan-out) -- meaningful complexity for a single-lineage
win, which the overfit discipline says not to build. Feasibility was fine
(the import resolver already chases re-export barrels); the blocker is corpus
thinness. Reopen only if an independent (non-trezor-lineage) repo appears.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Laravel decouples an event dispatch from its listener(s), linked by the event
class: event(new OrderShipped($order)) has no static edge to the
handle(OrderShipped $event) that runs it (usually a separate app/Listeners/
class). laravelEventEdges bridges each event(new X(...)) site -> every
listener's handle for X.
Two registration mechanisms, both real and both needed (built together):
- (A) auto-discovery: a typed handle(EventType $e) first param, read from the
method declaration source (PHP method nodes carry no signature, like C#); a
handle(A|B $e) union is split into two events.
- (B) the `protected $listen = [XEvent::class => [Listener::class, ...]]` map in
an EventServiceProvider, parsed from comment-stripped source (so a
fully-commented map on an auto-discovery app contributes nothing). This is the
only way to link a listener whose handle() is untyped.
Job exclusion is free: queued jobs dispatch via ::dispatch()/dispatch() (not
matched) and their handle() takes an injected service, never an event type, so
matching only event(new X) excludes them by construction. `use Dispatchable` is
not keyed on (unreliable in real apps).
Surfaces as `dynamic: laravel event` via the generic synth-edge fallback.
Validated 100% precision on two grep-confirmed repos exercising both
mechanisms: koel (small, populated $listen map, 9 edges incl. the untyped-handle
case and a fan-out) and firefly-iii (large, pure auto-discovery / empty $listen,
141 edges, 0 source/target false positives, 0 namespace mismatch, union split
verified); 0 on the guzzle control. Namespace-agnostic (FireflyIII\ not
hardcoded). Node-stable (pure edge synth). Suite 1623 green.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Sidekiq decouples a job's enqueue site from the worker's perform method,
linked by the worker class NAME: DestroyUserWorker.perform_async(id) has no
static edge to DestroyUserWorker#perform (usually in app/workers/, away from
the controller/model that enqueues it). sidekiqDispatchEdges bridges each
Worker.perform_async/_in/_at(...) site -> that worker's instance perform.
Name-keyed, like Celery: the receiver class must be a Sidekiq worker, gated by
reading `include Sidekiq::Job|Worker` from the class body (the mixin is an
external gem module that forms no resolvable edge). ActiveJob's perform_later/
_now is a different shape and deliberately not matched.
Namespace disambiguation was the n>1 validation payoff: loomio's flat workers
hid a collision bug that forem exposed (four SendEmailNotificationWorker classes
across modules; simple-name resolution mis-targeted 7/143 edges to the wrong
namespace). Fixed by resolving a namespaced receiver via exact qualified-name
lookup first, falling back to the simple name only for a unique worker — an
ambiguous unqualified collision bails (precision over recall).
Surfaces as `dynamic: sidekiq dispatch` via the generic synth-edge fallback.
Validated 100% precision on two grep-confirmed repos: loomio (medium,
Sidekiq::Worker, 47 edges) and forem (large, both include aliases — 131
Sidekiq::Job + 11 Sidekiq::Worker, 142 edges, 0 worker/source false positives,
0 namespace mismatch); 0 on the jekyll control. Node-stable (pure edge synth).
Suite 1621 green.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
MediatR decouples a _mediator.Send(x)/.Publish(x) call from the Handle method
that runs it, linked by the request/notification TYPE (the IRequestHandler<X,…>
generic), usually across files in a Clean Architecture layout — so flows
dead-end at the mediator call and the agent reads to find the handler.
mediatrDispatchEdges bridges each dispatch -> the matching handler's Handle.
Same two-pass, type-keyed shape as the Spring synthesizer, with two C#-specific
twists found by probing:
- C# method nodes carry NO signature (csharp.ts defines no getSignature), so
Pass 1 reads the request type from the handler CLASS base-list source
(`: IRequestHandler<X,…>` first generic arg) and binds the class's Handle.
- The dominant .NET idiom is VARIABLE-passed, not inline `Send(new X)` — eShop
has zero genuine inline MediatR sends. So Pass 2 resolves the sent type from
the argument three ways within the enclosing method: inline `new X(…)`, a
local `var v = new X(…)` (backward scan), or a parameter/local declared `X v`.
Two precision gates: the receiver must be mediator-ish (mediator/sender/
publisher — excludes MAUI MessagingCenter.Send, HttpClient.Send) AND the
resolved type must have a handler (so a same-named non-request DTO is never
bridged). Handles the IdentifiedCommand<T,R> wrapper and void IRequestHandler<T>.
Surfaces as `dynamic: mediatr dispatch` via the generic synth-edge fallback.
Validated 100% precision on two grep-confirmed repos: jasontaylordev/
CleanArchitecture (small, 9 edges, inline + param forms) and dotnet/eShop
(medium, 9 edges, 0 false positives, variable-passed + IdentifiedCommand +
the CancelOrderCommand DTO-collision correctly avoided); 0 on the
Newtonsoft.Json control. Node-stable (pure edge synth). Suite 1619 green.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Spring decouples an event publisher from its listener(s) through the
application event bus, linked by the event TYPE: publishEvent(new XEvent(...))
has no static edge to the @EventListener void on(XEvent e) that handles it
(usually a different class), so flows dead-end at the publish and the agent
reads to find the handlers. springEventEdges bridges each publishEvent(new X)
site -> every listener of X.
Two-pass, type-keyed (no name resolution, so precision is structural):
- Pass 1 builds Map<eventType, listenerMethod[]> from @EventListener /
@TransactionalEventListener methods (event type = first param type off the
node signature, or the @EventListener(X.class) value form) and the older
`implements ApplicationListener<X>` onApplicationEvent methods.
- Pass 2 links each publishEvent(new XEvent(...))'s enclosing method to every
listener of XEvent; multi-line `publishEvent(\n new X(...))` handled.
Key Java fact (probed): a method node's range INCLUDES its leading annotations
(startLine is the first @-line, not the `public void` decl), so the annotation
gate scans DOWNWARD from startLine bounded to consecutive @-lines, which can't
bleed into an adjacent method.
Surfaces as `dynamic: spring event` via the generic synth-edge fallback.
Validated 100% precision on two grep-confirmed repos exercising all listener
forms: halo (medium, 1254 java, 33 edges across 24 events, 0 publisher/listener
false positives, param-typed + (X.class) + ApplicationListener + fan-out) and
thombergs/code-examples (4 edges, adds @TransactionalEventListener); 0 on the
gson control (no Spring). Node-stable (pure edge synth). Suite 1617 green.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Celery decouples a task's call site from its body: a @shared_task / @app.task
decorated def is invoked via task.delay(...) / task.apply_async(...), a dynamic
hop with no static edge, so flows dead-end at the dispatch and the agent reads
tasks.py to reconstruct them. celeryDispatchEdges links the enclosing function
at each .delay/.apply_async site -> the task function body.
Precision rests on a DECORATOR gate: the dispatched name must resolve to a
Python function carrying a task decorator, read from the source lines ABOVE its
def (the def's startLine excludes the decorator, and no decorates edge exists
since @shared_task is an unresolved external import). The kind==='function'
filter drops same-named test-method collisions; canvas forms (group(t).delay(),
t.s()/.si()) have no single identifier before .delay so they're skipped, not
mis-bridged; cross-module name collisions prefer a same-file task else bail.
Surfaces as `dynamic: celery dispatch` via the generic synth-edge fallback.
Validated 100% precision on two grep-confirmed repos exercising both decorator
dialects: paperless-ngx (small, @shared_task, 31 edges, 31/31 real) and pretix
(medium, @app.task, 63 edges across 21 tasks, 0/21 false positives); 0 on the
httpie control (no Celery). Node-stable (pure edge synth). Suite 1615 green.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Completes the Vue store dispatch family (the Pinia bridge was 8ea3205). Vuex
dispatches by a runtime STRING key — `dispatch('user/login')` /
`commit('SET_TOKEN')` / `this.$store.dispatch('app/toggleDevice')` — with no
static edge to the handler.
vuexDispatchEdges (callback-synthesizer.ts): the last `/` segment of the key is
the action/mutation name, the preceding segment is the namespace (≈ the module
file). Resolve the name to a function node IN A STORE FILE — the ≥2-signal
store-file gate excludes a same-named `api/` helper (`getInfo`/`login` collide in
practice) — disambiguated by the immediate namespace segment appearing in the
path (handles deep nesting like `d2admin/user/set`), or the same file for a root
local `commit('M')` inside an action. The .vue component is a dispatcher fallback
for top-level setup calls. Surfaces in explore as `dynamic: vuex dispatch`.
Also extracts the canonical Vuex MODULE shape `export default { namespaced,
actions: {…}, mutations: {…} }` (tree-sitter.ts: extractStoreCollectionMethods
off the export_statement, store-file gated) — its object-literal methods were
otherwise never nodes, so d2-admin's actions couldn't be bridged.
Validated 100% precision on three repos — vue-element-admin (55 edges),
vue-admin-template (12), d2-admin (63): 0 non-store targets, 0 namespace
mismatches (54/54 namespaced edges route to the correct module despite 6
colliding `load` actions in d2-admin), 0 on Redux controls (basetool/uwave —
non-string `dispatch()` correctly ignored). Suite green (1613); new
__tests__/vuex-dispatch-synthesizer.test.ts.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
The dispatch bridge for Pinia, on top of the store-action extraction foundation
(cc9c2f7). A consumer does `const store = useXStore()` then `store.action()` —
a method-on-instance call with no static edge to the action, which lives in the
store module. So tracing "what does this view do when it loads" stopped at the
`store.fetchUser()` line.
piniaStoreEdges (callback-synthesizer.ts): map each `const useXStore =
defineStore(...)` factory → its file; per consumer file, bind `const s =
useXStore()` vars; link the enclosing function (or the .vue component, via a
fallback) → the `s.method()` action node IN THE STORE'S FILE. The same-store-file
gate is the precision lever — a Pinia built-in (`$patch`) or an unrelated
same-named method resolves to nothing. Covers the options and setup store forms
uniformly (the action is a function node in the store file either way) and
surfaces in explore as `dynamic: pinia store`.
Validated 100% precision (Geeker 41 edges, MallChat 64; 0 targets outside a
store file), 0 on the Vuex-only element-admin control (no defineStore), n=2 in
hand. Suite green (1612); new __tests__/pinia-store-synthesizer.test.ts. The
Vuex string-key dispatch bridge (`dispatch('ns/action')`) remains a follow-up
(n=1 in hand — needs a 2nd string-literal Vuex repo).
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
A Vue store's callable surface — Vuex `actions`/`mutations`/`getters` and Pinia
store actions — lived only as object-literal properties, so the symbols an agent
looks for (`login`, `getSessionList`, `getAuthMenuList`) were never nodes:
`codegraph search`/`codegraph_node` returned "not found" and the agent had to
read the store by hand. This extracts them as function nodes (with their real
bodies + callees), the foundation under any later dispatch-bridge synthesis.
A corpus probe (vue-element-admin, vue2-elm, Geeker-Admin, MallChatWeb) showed
Vue store dispatch is NOT one clean string-keyed shape but ~5; extraction here
covers the three dominant definition forms:
- Vuex MODULE: non-exported `const actions/mutations = {…}` collections
(gated by a ≥2-signal looksLikeVueStoreFile + the object-of-functions shape,
so a Redux file's stray `const actions` is a 0-node no-op).
- Pinia OPTIONS: `defineStore({ actions: {…}, getters: {…} })` — methods of
the actions/mutations/getters properties of a store-factory config.
- Pinia SETUP: `defineStore('id', () => { const foo = …; return {…} })` — the
body-local function consts (findPiniaSetupFn + extractPiniaSetupBody; the
generic body walk doesn't reach nested function scopes). Distinguished from
an inline action map via objectHasInlineFunctions so zustand/SvelteKit
extraction is unchanged.
Validated findable on element-admin (50 fns), Geeker (21), MallChat (68);
0-node no-op on a non-Vue control (uwave-web, unchanged at 4496 nodes). Deferred
(documented in the backlog): vue2-elm's `export default {…}` split-file +
computed-key `commit(CONST)` form (n=1), and the dispatch BRIDGE synthesis
(Vuex string-key + Pinia useStore().action()). Suite green (1610); new
__tests__/vue-store-extraction.test.ts.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Adds the RTK Query member of the dispatch-through-indirection family
(synthesizedBy:'rtk-query'). An RTK Query endpoint defined inside
`createApi({ endpoints })` and the `useGetXQuery`/`useUpdateYMutation` hook it
generates were both invisible to static extraction, so a `component →
useGetXQuery → getX → queryFn` flow had nothing to connect and explore
dead-ended on the API slice.
Extraction (tree-sitter.ts): mint a function node per endpoint — named by its
key, spanning the queryFn/query handler so its calls attribute — handling both
the `endpoints: build => ({...})` arrow and `endpoints(builder){ return {...} }`
method forms, with a bare-node fallback for factory handlers
(`queryFn: makeFn(url)`); and a function node per generated-hook binding from
`export const {...} = api`, carrying a sentinel signature.
Resolution (callback-synthesizer.ts): rtkQueryEdges bridges each generated-hook
node to its same-file endpoint by the naming convention (strip use + optional
Lazy + Query|Mutation, lowercase head). Component→hook is normal import/call
resolution; the hook→endpoint hop surfaces in explore as `dynamic: rtk query`.
Validated 100% precision (hooks == synth edges, 0 cross-file) on basetool (54),
minusx-metabase (11), shapeshift (13); 0 on the uwave-web control (no createApi
→ a complete no-op). The sentinel gate correctly ignores hand-written
look-alikes (shapeshift's useFoxyQuery is a real custom hook, never bridged).
Full suite green (1608); new __tests__/rtk-query-synthesizer.test.ts.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Adds `objectRegistryEdges` — a dynamic-dispatch synthesizer for the command/handler
registry pattern: an object literal maps string keys → handler classes/functions, then
dispatches by a RUNTIME key static parsing can't follow:
this.commands = { [Cmd.ADD]: AddObjectCommand, ... } // registration
new this.commands[command](args).execute() // dynamic dispatch
It links each dispatching function → each registered handler's callable entry (a class's
execute/run/handle method — preferring the method chained at the dispatch site — or the
function value), like the gin-middleware-chain fan-out. Same-file registry+dispatch only.
Validated precise on 3 real repos (the discipline that caught redux-thunk's n=1 overfit):
EtherealEngine's CommandManager (64 edges, class registry → .execute), Prebid.js (7:
builder/consent/message dispatch, function registry), warp-drive (1). Zero false positives
after several precision gates found during validation:
- skip minified/generated bundles (avg line length > 200) — draco/three.min were a
false-positive minefield of `h[x](...)` calls + `{a:b}` literals;
- DEPTH-AWARE entry parsing (top-level `key: Identifier` only) so method-shorthand bodies
and nested objects don't leak their inner `k: v` pairs as bogus handlers;
- callable-only targets (drop data `constant`s — a `{x: URL}` entry resolving to the global);
- dynamic-dispatch gate (a statically-accessed look-alike object yields nothing).
Handles constructor and field-initializer registry forms (this. normalized). Surfaces in
codegraph_explore via the existing Dynamic-dispatch-links section.
Deferred (recall, documented in dispatch-synthesizer-backlog.md): assign-then-call dispatch,
augmentation registration (reg[k]=H), and the cross-file barrel-namespace variant
(trezor getMethod) — the hard tier.
Full suite green (1606); new __tests__/object-registry-synthesizer.test.ts.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Two fixes hardening the redux-thunk dynamic-dispatch synthesizer, found by
validating it on real RTK repos beyond its trezor origin (uwave-web,
session-desktop, octo-call):
- Surfacing: buildFlowFromNamedSymbols filtered its named set to CALLABLE
kinds, so synthesized edges between `constant` nodes (RTK thunks are
`const X = createAsyncThunk(...)`) never entered the Flow / Dynamic-dispatch
links scan — invisible at every tier, while the kind-agnostic Relationships
section is off below 500 files. Add a `dynNamed` set (named constant/variable/
field nodes with a heuristic edge) feeding a shared collectSynthLinks into the
"## Dynamic-dispatch links" section, threaded through the named.size<2
early-out (both-endpoints-constant hit return EMPTY first) and the main path.
Main call-chain stays callable-only; the <500 budget tiers are untouched.
No-op for callable flows. Plus a generic synthEdgeNote fallback so any synth
hop reads "dynamic: <kind> @site", not a bare "[calls]".
- Precision: reduxThunkEdges resolved a dispatched name by first-match-by-kind,
so a thunk name colliding with a same-named service function linked to the
wrong node (octo-call `leaveCall`). Prefer thunk-signature const > other
const > same-file callable > first match.
Tests: new explore-synth-constant-endpoints.test.ts (surfacing on a small repo)
+ a collision case in redux-thunk-synthesizer.test.ts. Full suite green (1605).
Rationale + coverage backlog in docs/design/dispatch-synthesizer-backlog.md.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Strips the bring-your-own-model reasoning offload and managed CodeGraph AI
integration (login/logout/usage commands, offload config/credentials/reasoner
modules, and the synthesizeOffload call in codegraph_explore). The eval findings
showed raw source output outperformed the synthesized path on accuracy, so
codegraph_explore reverts to returning verbatim retrieved source exclusively.
CHANGELOG and README sections for reasoning offload are removed; test comments
and DEFAULT_MCP_TOOLS description are updated to drop offload references.
Two gaps closed in `codegraph_explore` output quality:
**Interface/registry dispatch (#687 extension).** When a named token resolves to
a large same-name family (≥8 members) that doesn't land on the connected flow, the
static path truly ends there — the target is chosen at runtime from N implementations
(plugin/strategy/handler interface). `buildPolymorphicBoundaries` detects this via
`implements`/`extends` edges, ranks candidate supertypes by their TRUE graph-wide
implementer count (not FTS sample frequency, which is biased), and emits a
"## Interface dispatch" section naming the supertype, implementer count, and a few
concrete targets. Fires only for uncovered named tokens; a connected flow stays silent.
**Oversize spine method windowing.** A flow entry that is a god-method (e.g. n8n's
962-line `processRunExecutionData`) previously lost the per-file budget to denser
peripheral blocks and was dropped, forcing the agent to `Read` it back. The spine
call site (edge line to the next hop) is now tracked via `spineCallSites` and used
to window the method to its signature head + a ±28-line band around the call, keeping
it under the OVERSIZE_SPINE_LINES threshold. Spine clusters also rank first in the
budget sort and may exceed the per-file cap up to a 2.5× ceiling so they can never be
starved by co-flow files.
Test suite gains an `interface dispatch` describe block (announce, silent-on-connected,
silent-below-threshold) and uses `beforeAll`/`afterAll` to pin `CODEGRAPH_OFFLOAD_DISABLE=1`
so structural assertions are hermetic regardless of machine config.
Three additions to tighten the eval loop:
- offload-eval-styles.sh: new 4-arm eval (raw/refs/map/src) isolating the Worker's
output shape's effect on main-session tokens, latency, and accuracy. Delegation
blocked by default (DISALLOW=Agent) so variance from Haiku subagent spawning doesn't
contaminate the measurement.
- offload-eval-cost.mjs: cost/token analyzer that reads Claude Code's own per-model
accounting (modelUsage.costUSD) rather than re-deriving from raw token counts,
giving a correct main(Sonnet)/sub(Haiku) split with proper per-tier pricing.
- offload-eval-3arm.sh: adds DISALLOW env to block sub-agent delegation across all
arms, and REP_START to append reps to an existing run without clobbering earlier
jsonls (e.g. REP_START=4 REPS=3 → reps 4,5,6).
Also adds CODEGRAPH_OFFLOAD_STYLE forwarding to the managed gateway so the styles
eval can drive output shape end-to-end; the field is stripped before the upstream
model call and never sent to BYO endpoints.
Reproducible suite measuring the managed CodeGraph AI offload and the front-load
UserPromptSubmit hook (approach 1) vs raw codegraph and no-codegraph, across repo
sizes, on time / main-session tokens+cost / CodeGraph-AI tokens+cost / accuracy.
All agent arms run claude -p sonnet --effort high; eval-only, nothing shipped.
- offload-eval-setup.sh: clone + index 4 memory-probe-verified "not-trained-on" repos
(mtkruto/postybirb/shapeshift/trezor — small→large) so the no-codegraph baseline is honest.
- offload-eval-3arm.sh / -frontload.sh: one repo, the arms (offload/raw/nocg, frontload).
- offload-eval-matrix.sh / -frontload-matrix.sh: drive all 4 tiers.
- offload-eval-hook.mjs: the front-load hook (self-locates its engine; CG_FRONTLOAD_DEBUG to log).
- offload-eval-metrics.mjs / -judge.mjs (Sonnet) / -summarize.mjs: extract, score, aggregate.
- offload-eval-ground-truth.json: source-verified canonical flows (the judge's reference).
- offload-eval.md: usage + the 2026-06 findings (raw = the win; offload least-accurate;
front-load solves adoption but exposes explore's dynamic-dispatch gaps).
Scripts are path-portable (self-locating $HERE/$ENGINE; AGENT_EVAL_OUT scratch dir).
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
`CODEGRAPH_OFFLOAD_DISABLE=1` immediately disables the offload for the current
process without touching the persisted config or stored login — useful for A/B
arms or sessions where raw source is preferred.
`CODEGRAPH_OFFLOAD_USAGE_LOG=` appends one JSONL entry per call with token
counts, charged credits, and derived cost (`creditsCharged / 100_000`) so a
harness can attribute CodeGraph AI spend to a single run independently of the
server's cumulative totals. Both features are best-effort and never disrupt the
degradable offload path.
Also fixes the `login` credit display to check `unlimited` before the numeric
balance, so comped/internal accounts don't incorrectly show "0 remaining".
Adds a `usage` subcommand that pings `/v1/usage` with the stored token and
displays balance, plan, 30-day explore/token counts, and allowance reset date.
Degrades quietly in all non-happy-path states — signed out, BYO endpoint, or
unreachable server — so managed reasoning remaining optional doesn't change.
Also extends `OffloadUsage` with the fields the endpoint already returns
(`unlimited`, `banned`, `tokensLast30`, `callsLast30`, `creditsLast30`) that
were previously untyped.
The old `offload` command family required users to paste a token manually (`offload login --token `) and exposed bring-your-own-endpoint plumbing (`set-endpoint`, `status`, `disable`) as top-level CLI surface. This replaces it with a standard OAuth device flow (RFC 8628 shape) against the CodeGraph dashboard.
`codegraph login` calls `/api/cli/device/start`, opens the browser to the returned URL, polls `/api/cli/device/token` until the user approves, then stores the minted token and enables managed reasoning. `codegraph logout` clears it. BYO-endpoint configuration moves entirely to env vars (`CODEGRAPH_OFFLOAD_URL` / `CODEGRAPH_OFFLOAD_KEY` / `CODEGRAPH_OFFLOAD_MODEL`), keeping the CLI surface minimal.
Adds the managed offload mode: point codegraph_explore at the CodeGraph AI metered
gateway (https://ai.getcodegraph.com) with an org token instead of a BYO provider key.
Same synthesis client, pointed at codegraph-ai-proxy (a metered OpenAI-compatible gateway).
- credentials.ts — org token in ~/.codegraph/credentials.json (0600); unlike a BYO
provider key it's a revocable org-scoped auth token (gh/npm-login style), kept out
of config.json
- config.ts — managed branch in resolveOffload: default gateway URL + public model id
(openai/gpt-oss-120b) + login token as bearer; managed requires a token to be enabled
- reasoner.ts — fetchUsage() reads the credit balance from /v1/usage
- bin/codegraph.ts — `codegraph offload login --token <t>` / `logout`; status shows the
managed tier + live balance
Proven GREEN end-to-end against a local wrangler-dev of the proxy: org token validated,
credits prechecked, real Cerebras synthesis returned, and credits metered + charged
(250,000 → 248,473). Graceful degrade on upstream failure; balance via /v1/usage.
Phase 3 (codegraph login device flow) replaces the manual --token.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
codegraph_explore can now hand the source it retrieved to a reasoning model you
point at — any OpenAI-compatible endpoint (Cerebras, OpenAI, a local vLLM/Ollama)
with your own key — and return that model's tight, cited answer instead of the
raw source dump. The agent's main context gets the answer in far fewer tokens, at
the cost of one network round-trip.
Off by default. Configure with `codegraph offload set-endpoint <url> --model <m>
--key-env <ENV>` (or the CODEGRAPH_OFFLOAD_* env vars); status/disable manage it.
The API key is never written to disk — the config stores the NAME of an env var
and the key is read from it at call time. Strictly degradable: any failure
(no endpoint, network, timeout, empty answer) returns null and the call falls
back to the local source, so the offload can never surface an error to the agent.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
codegraph_explore's file sort is primarily driven by Random-Walk-with-Restart
graph-centrality mass, seeded from the query's text matches. In a cross-layer
monorepo (an API server alongside a much larger, internally dense frontend that
mirrors the same domain words), that mass skews to the bigger layer — so a
backend service/handler that genuinely matches several query terms, even when
it's the #1 search hit, sorts below hits=0 frontend files and gets truncated out
of the response, and the agent reads it back.
Add a corroboration tier above the graph signal: a file that is BOTH an
entry/central file AND matched by >=2 distinct query terms is kept in. The
entry/central guard prevents an incidental multi-term file (a type/util file
that isn't the flow) from displacing a graph-central answer file — a blunt
hits-only tier regressed that case. Single-layer repos are unaffected. Gated by
CODEGRAPH_RANK_NO_MULTITERM=1.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Value-reference edges (same-file `references` edges from a reader to the
file-scope const/var it reads) shipped behind CODEGRAPH_VALUE_REFS pending an
agent A/B. The A/B is in: on excalidraw the edges are correct and precise (node
count unchanged) and they transform the impact/blast-radius API — `impact` on a
const consumed by 103 readers goes from 1 affected symbol to the full radius.
That blast-radius API is what `codegraph impact` and CodeGraph Pro's verdict
engine consume, so the win is impact correctness; the agent path showed no
regression. Flip the default on; CODEGRAPH_VALUE_REFS=0 disables.
Also close the one precision gap the A/B surfaced: a bundled/Emscripten
`const Module` re-declared as an inner `var Module` / param produced false
positives (nested readers resolve to the inner binding). isGeneratedFile() is
path-only and can't catch content-minified bundles, so prune SHADOWED targets at
the syntax level — drop any value-ref target whose name is bound by more than one
`variable_declarator` in the file. On excalidraw this removes the 23 false
positives while preserving every real reader (impact unchanged at 170).
Adds regression coverage (there was none): same-file readers are edged, they
surface in the impact radius, shadowed consts are NOT edged, and
CODEGRAPH_VALUE_REFS=0 emits nothing.
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
`codegraph index` ran extraction against the already-populated DB without
clearing it first. On an unchanged tree every file's content hash still
matched, so the orchestrator skipped re-inserting all of them and the run
reported its delta (after - before = 0) as "0 nodes, 0 edges" — which read as
if `index` had wiped the graph. `init` only ever differed because it runs on a
freshly created, empty DB.
Clear the existing graph before re-indexing so `index` rebuilds from scratch
and reports the same complete result as a fresh `init`. `--force` keeps its
role as the home-dir/root-path override; `sync` stays the incremental path.
Adds an end-to-end regression test driving the built binary (init -> index),
asserting the graph stays populated and the summary is never "0 nodes, 0 edges".
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
JoshandGitHub