codegraph/.claude/handoffs/explore-overhaul-bench-2026-06-02.md

name, date, project, branch, summary

name	date	project	branch	summary
explore-overhaul-bench-2026-06-02	2026-06-02 06:30	codegraph	feat/explore-overhaul-store-coverage	Finished the explore-overhaul arc (explore as sole primary + store coverage + overload disambiguation + method-atomic render + node file/line selector + explore reshaped to native-read windows) and validated it — all 7 README repos hit 0 Read/0 Grep at effort=high; only the README benchmark write-up remains.

Handoff: explore-overhaul arc — validated 0-reads across all 7 README repos; README write-up is the last step

Resume here — read this first

Current state: All code is committed + pushed on feat/explore-overhaul-store-coverage (4 commits, working tree clean). The why-Read agent sweep is DONE: all 7 README repos × 4 runs = 28/28 runs hit 0 Read / 0 Grep on --effort high, every run "codegraph was sufficient." WITH-high medians are captured (~59% fewer tool calls · 51% fewer tokens · ~15% cheaper · 0 reads vs the existing README WITHOUT) — the earlier cost REGRESSION (-3%) is recovered. The only open item is updating the README benchmark section, which is blocked on one methodology decision. Immediate next step: Decide how to publish: (A) do a CLEAN both-arms run on effort=high with the PLAIN prompt (no why-Read) for an apples-to-apples table, or (B) write the WITH-high deltas in against the existing WITHOUT with a cross-effort caveat. Then edit README.md (benchmark table + per-repo breakdowns + average line + methodology date) and open the PR.

Suggested next message: "Do the clean both-arms run on effort=high with the plain prompt for all 7 repos, then update the README benchmark table + per-repo breakdowns from those medians and open the PR."

Goal

Make codegraph_explore a true Read-replacement — flow/architecture questions answered with ~0 Read/Grep — then re-validate the README benchmark on the current build and update its numbers. Definition of done: README benchmark reflects the current build with defensible (same-effort) numbers; branch merged via PR.

Key findings

• The arc (all shipped on the branch): explore is the SOLE primary tool (codegraph_context + codegraph_trace removed in the prior session, this branch); store-action coverage (object-literal method extraction — a GENERAL AST rule in tree-sitter.ts extractVariable/extractObjectLiteralFunctions/findInitializerReturnedObject, covers Zustand/Redux/Pinia, not a per-lib hack); graph-ranking gate fix (a named/≥2-term file is never pruned); node all-overloads + file/line selector; method-atomic render (never half a method — drop whole methods/files); explore reshape to native-read windows.
• Native-read ground truth (from the WITHOUT transcripts): the agent natively reads ~6–9 files as ~100-line windows (77% ranged, median 100 lines, 51–250 dominant), located by func X( signature greps. That's the unit explore now mimics.
• Explore reshape (commit 50401a6, the latest mechanism): getExploreOutputBudget caps EVERY tier at ~24K (was 28/35/38K) + absolute 25K hard ceiling (was 1.5×-of-budget) — because a bigger response gets externalized by the host to a file the agent Reads back (a 35K vscode explore did exactly that) AND costs cache-writes. Repo size scales the CALL budget, not the response. Per-file = one ~150–250 line window: per-symbol bodyCap 2×→1.5× and the spine is windowed too (so tokio's big-spine worker.rs doesn't starve harness.rs's poll); central whole-file 4×→1.5× / 400→280 lines. Explore's named-symbol injection now uses cg.getNodesByName (direct index, not FTS) so a 50+-overload name (poll) surfaces the wanted def (Harness::poll) for the PascalCase-type-token bias to pick.
• node file/line selector (commit 5bf6ad8): codegraph_node takes optional file/line to pin an overload (the file:line a trail showed). findSymbolMatches (replaced findSymbol) enumerates ALL overloads via cg.getNodesByName (new passthrough index.ts → QueryBuilder), then file/line filters. The agent USES it in runs (run file:worker.rs line:508, poll file:harness.rs).
• Cost regression was REAL, now recovered. The pre-reshape n=4 benchmark (on max effort, bloated 35-42K explores) was −3% cost avg (vscode −52%) and reads were NOT 0 (vscode 6,4,0,7; tokio 3,4,2,2) — which corrected my earlier n=2 "0 reads everywhere" optimism. The reshape (≤25K, no externalization) + 0 reads flipped cost back to ~15% cheaper.

Gotchas

• STALE-DAEMON foot-gun: before ANY agent eval, pkill -f "serve --mcp"; rm -f <repo>/.codegraph/daemon.sock so it serves the current dist/. bench-why-repo.sh does this per-run. A npm run build does NOT take effect until the daemon is killed.
• Mac SLEEP corrupts long runs: the first overnight re-bench (5h on max) was sleep-corrupted — the Mac napped 16–42 min BETWEEN runs (~3h of the 5h was paused), inflating wall-clock for the later repos. Always wrap long runs in caffeinate -dimsu. Cost/tokens/reads are sleep-INDEPENDENT (billed API totals), so the cost regression was real (confirmed on vscode which ran fully awake before any sleep); only TIME is corrupted.
• --effort matters: the user's Claude default is max, which is "too much." The eval is pinned to --effort high (levels: low/medium/high/xhigh/max). bench-why-repo.sh honors EFFORT (default high). The MAX-mode runs were discarded and redone on high.
• why-Read prompt biases reads down (Hawthorne) + adds <0.3% to WITH cost/tokens. So the 28/28 0-read sweep proves codegraph is sufficient (it CAN answer with 0 reads); it slightly understates a natural run's reads. Keep it OUT of any published benchmark numbers (use plain prompt for the table).
• README methodology mismatch: WITH numbers are effort=high + why-Read; the existing README WITHOUT is the user's OLD default effort + plain. Cross-effort → can't publish cleanly without same-effort both arms. The user does NOT want to re-run WITHOUT repeatedly, but the effort CHANGED, so a one-time WITHOUT-on-high is a new (justified) measurement.
• PR policy: main is REVIEW_REQUIRED — work on the branch, open a PR, gh pr merge --squash --admin for self-review. Branch + push only so far; PR not opened (user asked branch+push).

How to test & validate

• Build: npm run build (exit 0). Full suite: npx vitest run → 1112 pass, 2 skip, 0 fail (npm-shim network tests can flake offline — pre-existing).
• Affected tests: npx vitest run __tests__/{explore-output-budget,adaptive-explore-sizing,context-ranking,explore-blast-radius,symbol-lookup,pr19-improvements,object-literal-methods}.test.ts.
• Deterministic probe (current dist/, in-process — NOT the daemon): node scripts/agent-eval/probe-explore.mjs /tmp/codegraph-corpus/<repo> "<query>" → confirm ≤~25K chars + the flow files render. node scripts/agent-eval/probe-node.mjs <repo> <symbol> code (e.g. poll file:harness.rs via a small script).
• Agent why-Read sweep (the real metric): EFFORT=high caffeinate -dimsu bash scripts/agent-eval/bench-why-repo.sh /tmp/codegraph-corpus/<repo> "<readme query>" 4 → parse /tmp/ab-why/<repo>/with*.jsonl for Read/Grep tool_use + the trailing ## Why I read section.
• All 7 repos are cloned + indexed on the current build at /tmp/codegraph-corpus/{vscode,excalidraw,django,tokio,okhttp,gin,alamofire}. README queries are in scripts/agent-eval/bench-readme.sh.
• Pass bar: flow question → ~0 Read at the explore-call budget, faster than WITHOUT, no control regression.

Repo state

• branch feat/explore-overhaul-store-coverage, last commit 9cf671a chore(agent-eval): add per-repo WITH-only why-Read benchmark harness. Pushed, in sync with origin.
• 4 commits: 22333c1 (explore-primary + store coverage + overload disambiguation + docs) · 5bf6ad8 (method-atomic render + node file/line selector) · 50401a6 (explore reshape: inline-cap + concentrated flow-windows + direct-index injection) · 9cf671a (why-Read eval harness).
• uncommitted: clean (only .claude/handoffs/ scratch, intentionally not committed).
• CHANGELOG [Unreleased] already updated for the whole arc. README + CLAUDE.md + docs/design banners updated to drop removed context/trace.

Open threads / TODO

• README benchmark update — decide (A) clean both-arms effort=high plain run vs (B) publish WITH-high deltas with caveat; then edit README.md (table + per-repo WITH/WITHOUT breakdowns + average + methodology date). WITH-high medians: vscode 4cg/742k/$0.70, excalidraw 6.5/834k/$0.74, django 3/509k/$0.59, tokio 6/921k/$0.77, okhttp 4.5/528k/$0.41, gin 4.5/573k/$0.48, alamofire 7.5/976k/$0.65 — all 0 reads.
• Open the PR (gh pr create) once the README is updated.
• Optional: delete dead dev probes scripts/agent-eval/probe-{trace,context}.mjs (their tools were removed; noted, not done).
• Memory project_codegraph_read_displacement is updated through the reshape; add the 28/28-on-high + cost-recovery result if you want it durable.

Recent transcript (oldest → newest)

Turn — "re-run the full benchmark to update README; ask why on reads"

• Claude: cloned+indexed all 7 repos; launched RUNS=4 bench-readme.sh (both arms). → ran overnight.

Turn — "what's still running? 5h overnight"

• Claude: bench was on the LAST repo (alamofire), ~90%. n=4 aggregate showed cost −3% (regression) + reads NOT 0 (vscode 6-7, tokio 2-4) — corrected my n=2 "0 everywhere." Diagnosed reads from transcripts: explore was 35-42K, too spread, dropped named flow methods.

Turn — "is it the lock screen?"

• Claude: Yes for TIME (Mac slept 16-42min between runs → 5h mostly paused) but NOT cost (vscode ran awake; cost is billed API). → recommend caffeinate.

Turn — "how do I stop Mac sleeping" → answered (Battery→Options / caffeinate).

Turn — "do the queries WITHOUT codegraph, see exactly what it Reads, mimic it"

• Claude: characterized native reads (77% ranged, median 100 lines, signature greps) → spec: ~100-line flow-windows, ~6-9 files, ≤25K.

Turn — "do it" (the reshape)

• Claude: Edit(tools.ts) → inline-cap 24K + concentrated windows + getNodesByName injection; updated budget tests; full suite green; probe vscode 35K→16K, tokio fits harness.rs. Committed 50401a6, pushed.

Turn — "why AST not LSP" (×2) + "reply to hd_nvim (ast-grep author)"

• Claude: explained the trade-off (breadth/speed/no-build/determinism/19-langs vs LSP type-precision-but-heavy); drafted the X reply (concede precision, reframe on goal/cost).

Turn — "re-run, ask Why on each WITH read, report per repo" → "no WITHOUT" → "MAX too much, use high, start over"

• Claude: built bench-why-repo.sh (WITH-only, why-Read, EFFORT default high); ran all 7 on high one repo at a time, reporting each. Result: 28/28 runs 0R/0G, all "sufficient." Aggregated WITH-high medians → ~15% cheaper (regression recovered).

Turn — "commit and push this"

• Claude: committed bench-why-repo.sh (9cf671a), pushed. → this handoff.
• Outcome: Arc complete + validated; README write-up + PR are all that remain.