Commit Graph
10 Commits
Author SHA1 Message Date
Colby McHenryandClaude Opus 4.6 7e6914ddff feat: Always enable embeddings, remove enableEmbeddings config option
Testing showed semantic search produces significantly better results for
natural language queries that Claude writes. FTS alone often ranks
properties above their parent classes and misses conceptual matches.
Embeddings are now always on — the vector manager is created eagerly,
with model download and embedding generation still happening lazily.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-03 10:03:41 -05:00
Colby McHenry 15b5e56322 fix: Lazy grammar loading and quantized embeddings to prevent V8 WASM OOM
Fixes #54 — `codegraph init -i` crashes with "Fatal process out of memory: Zone"
on large codebases because all 16 tree-sitter WASM grammar modules were compiled
upfront by V8, exhausting the WASM Zone allocator.

Changes:
- initGrammars() now only initializes the tree-sitter WASM runtime (Parser.init()),
  no longer eagerly loads all grammar files
- New loadGrammarsForLanguages() loads only grammars for languages actually present
  in the project (e.g. a Dart project loads ~2-3 grammars instead of 16)
- Orchestrator detects needed languages after file scan, before parsing begins
- Embedding pipeline now uses quantized model (~67MB vs ~270MB) to further reduce
  WASM memory pressure when embeddings are enabled
2026-03-18 14:21:54 -05:00
Colby McHenry 8346440592 Add WASM fallbacks for tree-sitter and SQLite, fix installer
Replace native tree-sitter with web-tree-sitter + tree-sitter-wasms for
universal cross-platform support. Add node-sqlite3-wasm as a fallback
when better-sqlite3 native bindings aren't available. Move better-sqlite3
and sqlite-vss to optionalDependencies so installs never fail.

Fix installer to use npx fallback when global npm install fails, so MCP
config, hooks, and quick-start instructions all work without the bare
codegraph command in PATH.

Fix tests: update schema version expectation, fix db test paths and
method names, extract MAX_OUTPUT_LENGTH as module constant, normalize
Windows path separators in import resolver.
2026-02-14 00:56:15 -06:00
Colby McHenry ce504c642a Fix performance issues. 2026-02-11 16:11:50 -06:00
Martin Oehlert 399d78b938 security: path validation, ReDoS prevention, picomatch, PID-based file lock
- Add validateProjectPath() to reject sensitive system directories
- Add isPathWithinRoot/isPathWithinRootReal for symlink-aware path checks
- Replace hand-rolled glob-to-regex with picomatch to prevent ReDoS
- Add isSafeRegex() to reject custom patterns with nested quantifiers
- Replace FileLock with PID-tracking version that detects stale locks
- Add symlink detection in removeDirectory/listDirectoryContents
- Add subdirectory name validation in ensureSubdirectory
- Add atomicWriteFileSync and corrupted file backup in config-writer
- Add MCP input validation (validateString) for all tool handlers
- Fix CLAUDE.md section replacement to handle ### subsections correctly
2026-02-10 11:22:04 +01:00
Colby McHenryandClaude Opus 4.6 932c567d18 Security hardening: path validation, input clamping, safe JSON, file locking
Implements security improvements inspired by PR #16 (credit: MO2k4):

- Add validatePathWithinRoot() to prevent path traversal attacks in
  extraction and context building
- Clamp MCP tool inputs (limit, depth, maxDepth) to sane ranges
- Use atomic writes (temp file + rename) for config saves
- Add symlink cycle detection in directory scanning to prevent infinite loops
- Replace all JSON.parse calls in db/queries.ts with safeJsonParse fallbacks
  to handle corrupted database metadata gracefully
- Add cross-process FileLock for DB write operations (indexAll, indexFiles,
  sync) to prevent concurrent writes from CLI, MCP server, and git hooks
- Remove unused path import from context/index.ts

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-02-09 23:18:40 -06:00
Colby McHenry d0ee6f7fc4 Enhances code extraction and project indexing
Adds support for Dart and Liquid languages with tree-sitter parsing.
Improves accuracy of code symbol extraction for existing languages.
Indexes project files to enhance code navigation features.
Migrates build system to facilitate code contributions.
Removes git hook functionality.
Integrates Sentry for error tracking and reporting.
Enhances project initialization and configuration loading.
2026-02-09 22:18:59 -06:00
Colby McHenryandClaude Opus 4.5 3ad4d5b35d Download embedding model to ~/.codegraph/models on install
The nomic-ai model is now downloaded during npm install via a postinstall
script and stored globally in ~/.codegraph/models (shared across projects)
instead of per-project in .codegraph/models.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-21 13:29:03 -06:00
Colby McHenryandClaude Opus 4.5 6b672f9152 Add evaluation framework and fix call graph extraction
- Add evaluation test suite with TypeScript and Python fixtures
- Fix MCP server to defer CodeGraph init until rootUri received
- Fix call edge extraction by calling resolveReferences() after indexAll/sync
- Fix glob matching for root-level files (e.g., **/*.py now matches auth.py)
- Fix duplicate node extraction for methods inside classes
- Update context tests to use buildContext for semantic search + graph traversal
- Export unused formatter functions to fix build

Evaluation results:
- TypeScript: 96% precision, 79% recall, 85% F1
- Python: 99% precision, 80% recall, 85% F1

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2026-01-18 18:48:22 -06:00
Colby McHenry cc6e7a5c89 Init 2026-01-18 16:25:00 -06:00