When a worktree is nested inside the main checkout (e.g. agent tools that place
worktrees under .claude/worktrees/<name>/), the nearest-.codegraph walk resolves
UP to the main checkout's index and queries silently return that tree's code —
usually a different branch. Symbols changed only in the worktree are invisible,
and nothing tells the user (#155).
Two layers:
- **Detection** (src/sync/worktree.ts): detectWorktreeIndexMismatch() compares
the caller's git working-tree root vs the resolved index root via
'git rev-parse --show-toplevel'. Best-effort; no git / not a repo / monorepo
subdir / plain-ancestor index → no warning.
- **Surface**: codegraph status (CLI + MCP) embeds a verbose multi-line warning;
every MCP read tool (search/context/trace/callers/callees/impact/explore/node/
files) prefixes a compact one-line notice naming the borrowed index and the
fix (codegraph init -i in the worktree). Detection is cached per session per
start path, so it costs at most a single pair of 'git rev-parse' spawns per
project no matter how many tool calls — respects the wall-clock-latency
invariant.
Real-git tests (no mocking) cover both layers. Validated on macOS / Linux
(Docker) / Windows (Parallels VM); 11/11 worktree tests green on all three.
Closes#155
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
The file watcher registered a recursive watch over the entire project (node_modules, build output, caches included) and filtered only in the callback — exhausting the Linux inotify budget on large repos (#276). It now uses chokidar and excludes the same directories the indexer ignores (built-in default-ignore set + the project .gitignore) BEFORE registering a watch, so the watch count on a 900-dir node_modules drops from ~1200 to ~14 even with no .gitignore. Stacks with the shared daemon (#411): one watcher across agents, now small.
Also hardens the #411 daemon lockfile against a concurrent-startup race the new watcher timing made reproducible — the lock is now created atomically with its content (temp-write + hard-link), so racing daemons can never both win. Validated on macOS, Linux (Docker), and Windows (chokidar + fs.linkSync on NTFS).
Co-Authored-By: Colby McHenry <me@colbymchenry.com>
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Remove .codegraph/config.json and the entire config surface. CodeGraph now
indexes every file whose extension maps to a supported language and respects
.gitignore everywhere — git repos via git itself, non-git projects via the
`ignore` library (root + nested .gitignore files, the same way git does).
- Remove CodeGraphConfig/DEFAULT_CONFIG, src/config.ts, and the public config
API (the `config` option on init, getConfig/updateConfig/getConfigPath).
- Derive the source-file allowlist from EXTENSION_MAP (isSourceFile); maxFileSize
is now a constant. Drop the .codegraphignore marker.
- Behavior change: committed, non-gitignored dirs (vendor/, a committed dist/)
are now indexed — .gitignore is the single source of truth.
Earlier inert fields (languages, frameworks, extractDocstrings, trackCallSites,
customPatterns) and their dead helpers are removed as part of this.
Resolves#283.
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Recursive fs.watch on a WSL2 /mnt NTFS/9p mount walks the directory tree
with every readdir/stat crossing the Windows boundary, stalling the event
loop long enough to blow past opencode's 30s MCP handshake timeout so the
tools never appear. This is the file-watcher half of the #172 fix, which
moved the DB/WASM open off the handshake but left the watcher on the
critical path.
- Add watchDisabledReason() policy: CODEGRAPH_NO_WATCH (off) >
CODEGRAPH_FORCE_WATCH (force on) > WSL2 + /mnt auto-detect (off).
FileWatcher.start() and the MCP server both honor it; the server now
logs why watching is off and how to refresh.
- Add `codegraph serve --mcp --no-watch`.
- When watching is off, init/install offer git sync hooks (post-commit,
post-merge, post-checkout) that run `codegraph sync` in the background,
or fall back to manual sync; either way the user is told the index
stays frozen until re-synced. uninit removes the hooks.
- Tests: watch-policy + git-hooks (idempotency, user-content preservation,
core.hooksPath).
Root-cause analysis and workaround by @mengfanbo123.
Closes#199
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Addresses the need for automatic graph synchronization on file changes. Implements FileWatcher using native OS file events (FSEvents/inotify/ReadDirectoryChangesW) with 2-second debouncing to prevent thrashing on rapid saves. Filters changes against include/exclude patterns and ignores .codegraph directory modifications. Integrates with CodeGraph API (watch/unwatch/isWatching methods) and MCP server for automatic activation. Updates documentation to reflect shift from semantic to full-text search and removal of manual hook installation requirements.
Adds support for Dart and Liquid languages with tree-sitter parsing.
Improves accuracy of code symbol extraction for existing languages.
Indexes project files to enhance code navigation features.
Migrates build system to facilitate code contributions.
Removes git hook functionality.
Integrates Sentry for error tracking and reporting.
Enhances project initialization and configuration loading.
