Enhances code extraction and project indexing

Adds support for Dart and Liquid languages with tree-sitter parsing.
Improves accuracy of code symbol extraction for existing languages.
Indexes project files to enhance code navigation features.
Migrates build system to facilitate code contributions.
Removes git hook functionality.
Integrates Sentry for error tracking and reporting.
Enhances project initialization and configuration loading.

src/index.ts

@@ -47,19 +47,22 @@ import {
 import { GraphTraverser, GraphQueryManager } from './graph';
 import { VectorManager, createVectorManager, EmbeddingProgress } from './vectors';
 import { ContextBuilder, createContextBuilder } from './context';
-import { GitHooksManager, createGitHooksManager, HookInstallResult, HookRemoveResult } from './sync';
 import { Mutex } from './utils';
 
 // Re-export types for consumers
 export * from './types';
 export { getDatabasePath } from './db';
 export { getConfigPath } from './config';
-export { getCodeGraphDir, isInitialized } from './directory';
+export {
+  getCodeGraphDir,
+  isInitialized,
+  findNearestCodeGraphRoot,
+  CODEGRAPH_DIR,
+} from './directory';
 export { IndexProgress, IndexResult, SyncResult } from './extraction';
 export { detectLanguage, isLanguageSupported, getSupportedLanguages } from './extraction';
 export { ResolutionResult } from './resolution';
 export { EmbeddingProgress } from './vectors';
-export { HookInstallResult, HookRemoveResult } from './sync';
 export {
   CodeGraphError,
   FileError,
@@ -129,7 +132,6 @@ export class CodeGraph {
   private traverser: GraphTraverser;
   private vectorManager: VectorManager | null = null;
   private contextBuilder: ContextBuilder;
-  private gitHooksManager: GitHooksManager;
 
   // Mutex for preventing concurrent indexing operations
   private indexMutex = new Mutex();
@@ -149,12 +151,9 @@ export class CodeGraph {
     this.graphManager = new GraphQueryManager(queries);
     this.traverser = new GraphTraverser(queries);
     // Vector manager is created lazily when embeddings are enabled
+    // Uses global ~/.codegraph/models directory for shared embedding models
     if (config.enableEmbeddings) {
-      this.vectorManager = createVectorManager(db.getDb(), queries, {
-        embedder: {
-          cacheDir: path.join(projectRoot, '.codegraph', 'models'),
-        },
-      });
+      this.vectorManager = createVectorManager(db.getDb(), queries, {});
     }
     // Context builder (uses vector manager if available)
     this.contextBuilder = createContextBuilder(
@@ -163,8 +162,6 @@ export class CodeGraph {
       this.traverser,
       this.vectorManager
     );
-    // Git hooks manager
-    this.gitHooksManager = createGitHooksManager(projectRoot);
   }
 
   // ===========================================================================
@@ -174,7 +171,7 @@ export class CodeGraph {
   /**
    * Initialize a new CodeGraph project
    *
-   * Creates the .codegraph directory, database, and configuration.
+   * Creates the .CodeGraph directory, database, and configuration.
    *
    * @param projectRoot - Path to the project root directory
    * @param options - Initialization options
@@ -320,6 +317,11 @@ export class CodeGraph {
    * Close the CodeGraph instance and release resources
    */
   close(): void {
+    // Dispose vector manager first to release ONNX workers
+    if (this.vectorManager) {
+      this.vectorManager.dispose();
+      this.vectorManager = null;
+    }
     this.db.close();
   }
 
@@ -371,12 +373,22 @@ export class CodeGraph {
 
       // Resolve references to create call/import/extends edges
       if (result.success && result.filesIndexed > 0) {
+        // Get count of unresolved references for accurate progress
+        const unresolvedCount = this.queries.getUnresolvedReferences().length;
+
         options.onProgress?.({
           phase: 'resolving',
           current: 0,
-          total: 1,
+          total: unresolvedCount,
+        });
+
+        this.resolveReferences((current, total) => {
+          options.onProgress?.({
+            phase: 'resolving',
+            current,
+            total,
+          });
         });
-        this.resolveReferences();
       }
 
       return result;
@@ -405,7 +417,21 @@ export class CodeGraph {
 
       // Resolve references if files were updated
       if (result.filesAdded > 0 || result.filesModified > 0) {
-        this.resolveReferences();
+        const unresolvedCount = this.queries.getUnresolvedReferences().length;
+
+        options.onProgress?.({
+          phase: 'resolving',
+          current: 0,
+          total: unresolvedCount,
+        });
+
+        this.resolveReferences((current, total) => {
+          options.onProgress?.({
+            phase: 'resolving',
+            current,
+            total,
+          });
+        });
       }
 
       return result;
@@ -446,10 +472,10 @@ export class CodeGraph {
    * - Import-based resolution
    * - Name-based symbol matching
    */
-  resolveReferences(): ResolutionResult {
+  resolveReferences(onProgress?: (current: number, total: number) => void): ResolutionResult {
     // Get all unresolved references from the database
     const unresolvedRefs = this.queries.getUnresolvedReferences();
-    return this.resolver.resolveAndPersist(unresolvedRefs);
+    return this.resolver.resolveAndPersist(unresolvedRefs, onProgress);
   }
 
   /**
@@ -909,52 +935,6 @@ export class CodeGraph {
     return this.contextBuilder.buildContext(input, options);
   }
 
-  // ===========================================================================
-  // Git Integration
-  // ===========================================================================
-
-  /**
-   * Check if the project is a git repository
-   */
-  isGitRepository(): boolean {
-    return this.gitHooksManager.isGitRepository();
-  }
-
-  /**
-   * Check if the CodeGraph git hook is installed
-   */
-  isGitHookInstalled(): boolean {
-    return this.gitHooksManager.isHookInstalled();
-  }
-
-  /**
-   * Install git hooks for automatic incremental indexing
-   *
-   * Installs a post-commit hook that automatically runs `codegraph sync`
-   * after each commit to keep the graph up-to-date.
-   *
-   * If a post-commit hook already exists:
-   * - If it's a CodeGraph hook, it will be updated
-   * - If it's a user hook, it will be backed up before installing
-   *
-   * @returns Result indicating success/failure and any messages
-   */
-  installGitHooks(): HookInstallResult {
-    return this.gitHooksManager.installHook();
-  }
-
-  /**
-   * Remove CodeGraph git hooks
-   *
-   * Removes the CodeGraph post-commit hook. If a backup of a previous
-   * user hook exists, it will be restored.
-   *
-   * @returns Result indicating success/failure and any messages
-   */
-  removeGitHooks(): HookRemoveResult {
-    return this.gitHooksManager.removeHook();
-  }
-
   // ===========================================================================
   // Database Management
   // ===========================================================================
@@ -983,12 +963,12 @@ export class CodeGraph {
 
   /**
    * Completely remove CodeGraph from the project.
-   * This closes the database and deletes the .codegraph directory.
+   * This closes the database and deletes the .CodeGraph directory.
    *
    * WARNING: This permanently deletes all CodeGraph data for the project.
    */
   uninitialize(): void {
-    this.db.close();
+    this.close();
     removeDirectory(this.projectRoot);
   }
 }