Self-contained distribution: bundle Node + node:sqlite, drop better-sqlite3/wasm (closes #238) (#282)

* fix(db): eliminate concurrent-read "database is locked"; add node:sqlite backend (#238)

WAL + busy_timeout were already enabled, so the issue's suggested fix was a
no-op. The real causes, addressed here:

- busy_timeout is now set first (before journal_mode) and lowered 120s -> 5s,
  so open-time pragmas wait out a lock instead of hanging for two minutes.
- getCodeGraph no longer opens a second connection to the default project when
  a tool passes its own projectPath (the in-process lock amplifier).
- The wasm fallback (no WAL) gets a bounded read-retry on SQLITE_BUSY.
- New: node:sqlite backend, preferred over wasm, so installs whose native
  better-sqlite3 build fails land on a real-WAL backend instead of no-WAL wasm.
- codegraph status / codegraph_status now report the effective journal mode, so
  a lock report is triageable (wal vs delete).
- CLI hard-blocks Node < 20 to actually enforce the engines floor.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* refactor(db)!: node:sqlite is the sole backend; drop better-sqlite3 + wasm

Now that distribution will bundle a Node 24 runtime, node:sqlite (real SQLite
with WAL + FTS5) is always available. Collapse the three-backend adapter to
node:sqlite only and remove the machinery the other two needed:

- Remove better-sqlite3 (optionalDependency) and node-sqlite3-wasm (dependency).
- Remove WasmDatabaseAdapter, the named->positional param translation, the
  SQLITE_BUSY read-retry, the wasm fallback banner, the backend env override,
  and the native/node-sqlite/wasm selection chain.
- createDatabase now opens node:sqlite directly, with a clear error pointing at
  the bundled release / Node 22.5+ when the module is absent.
- NodeSqliteAdapter.close() is idempotent and pragma() supports { simple }, to
  match the better-sqlite3 behavior callers relied on.
- status (CLI + MCP) reports the single node:sqlite backend; journal-mode
  diagnostics and the getCodeGraph single-connection fix are retained.
- Tests repointed off better-sqlite3 onto node:sqlite.

Net -1044 lines. Running from source now requires Node 22.5+.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(dist): self-contained bundle prototype (vendored Node + install channels)

Phase 3 of the node:sqlite migration: ship a vendored Node runtime so CodeGraph
runs with no system Node and no native build (node:sqlite is built in).

- scripts/build-bundle.sh: build a per-platform archive (official Node + dist +
  prod deps + launcher). Same recipe per platform; pins Node v24.16.0.
- install.sh: curl|sh installer (no Node required) — detects os/arch, pulls the
  archive from Releases, symlinks onto PATH; re-run to upgrade, --uninstall to
  remove. The VPS/SSH path.
- scripts/npm-shim.js: thin launcher for the npm channel — resolves the
  per-platform optionalDependency bundle and execs it, so `npm i -g` keeps
  working and the real work runs on the bundled Node regardless of the user's.
- BUNDLING.md: distribution design + release-pipeline TODO (CI matrix, platform
  packages, code signing, brew, retiring the Node-version gate).

Validated end-to-end: darwin-arm64 and linux-x64 bundles both run init + index +
status (Backend: node:sqlite, Journal: wal) + FTS query with NO system Node —
linux-x64 verified in a clean ubuntu:24.04 amd64 container. Release archives are
gitignored; CI will produce and upload them.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(dist): add Windows PowerShell installer (install.ps1)

The `irm … | iex` one-liner for Windows, mirroring install.sh: detect arch,
pull the matching bundle from Releases, extract to %LOCALAPPDATA%\codegraph,
add it to user PATH. Re-run to upgrade. (Windows bundle production in
build-bundle.sh is still TODO.)

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(dist): release workflow + npm packaging; README/CHANGELOG for bundled distro

- .github/workflows/release.yml: manually-triggered (workflow_dispatch) release
  matrix. Builds a self-contained bundle per platform on its own runner
  (darwin-arm64/x64, linux-x64/arm64), publishes a GitHub Release with all
  archives, and publishes the npm thin-installer (shim + per-platform packages).
  Windows targets are TODO (build-bundle.sh is unix-only).
- scripts/pack-npm.sh: assemble the npm packages from built bundles — per-platform
  packages tagged os/cpu + the main shim package with them as optionalDependencies
  (esbuild pattern). Proven locally: npm-install the tarballs, run via the shim,
  resolves the bundle and runs on the bundled Node 24 (node:sqlite / WAL).
- README: install section now leads with the no-Node one-liners (curl|sh, irm|iex)
  then npm/npx; "bundled · none required" badge.
- CHANGELOG: standout headline for the self-contained release, plus Added/Changed/
  Removed for the install channels, node:sqlite backend, and dropped deps.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* feat(dist): Windows bundles + single-trigger release workflow

- build-bundle.sh: add win32-x64 / win32-arm64 targets — download Node's Windows
  zip, bundle node.exe + a .cmd launcher, output a .zip. Verified structurally
  (PE32+ node.exe, CRLF .cmd, portable node_modules). Since there are no native
  addons, any target builds on any OS, so the whole matrix builds on one runner.
- pack-npm.sh: handle .zip bundles and win32 packages (os: win32, node.exe).
- release.yml: simplified to your spec — manual trigger reads the version from
  package.json, builds all platform bundles, creates the GitHub Release with notes
  pulled from CHANGELOG.md, and publishes the npm shim + platform packages.
- BUNDLING.md: Windows + build-anywhere notes; release pipeline documented.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

.github/workflows/release.yml

@@ -0,0 +1,72 @@
+name: Release
+
+# Manually triggered ("Run workflow"). On trigger it:
+#   1. reads the version from package.json,
+#   2. builds a self-contained bundle for every platform (one runner — there's no
+#      native compilation, so cross-packaging is fine),
+#   3. creates the GitHub Release (tag v<version>) with all archives, using the
+#      release notes from CHANGELOG.md,
+#   4. publishes the npm thin-installer (shim + per-platform packages).
+#
+# Before triggering: bump package.json and make sure CHANGELOG.md has the matching
+# section (## [<version>], or ## [Unreleased]). Set the NPM_TOKEN repo secret.
+on:
+  workflow_dispatch: {}
+
+permissions:
+  contents: write   # create the GitHub Release + tag
+
+jobs:
+  release:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-node@v4
+        with:
+          node-version: 22
+          registry-url: https://registry.npmjs.org
+      - run: npm ci
+      - name: Ensure zip/unzip
+        run: sudo apt-get update -qq && sudo apt-get install -y -qq zip unzip
+
+      - name: Build all platform bundles
+        run: |
+          for t in darwin-arm64 darwin-x64 linux-x64 linux-arm64 win32-x64 win32-arm64; do
+            bash scripts/build-bundle.sh "$t"
+          done
+          ls -lh release
+
+      - name: Resolve version
+        id: ver
+        run: echo "version=$(node -p "require('./package.json').version")" >> "$GITHUB_OUTPUT"
+
+      - name: Release notes from CHANGELOG.md
+        run: |
+          V="${{ steps.ver.outputs.version }}"
+          node scripts/extract-release-notes.mjs "$V" > notes.md 2>/dev/null \
+            || node scripts/extract-release-notes.mjs Unreleased > notes.md 2>/dev/null || true
+          if [ ! -s notes.md ]; then
+            echo "::error::No release notes in CHANGELOG.md for [$V] or [Unreleased]."
+            exit 1
+          fi
+          echo "----- release notes -----"; cat notes.md
+
+      - name: Create GitHub Release
+        env:
+          GH_TOKEN: ${{ github.token }}
+        run: |
+          gh release create "v${{ steps.ver.outputs.version }}" \
+            release/codegraph-* \
+            --title "v${{ steps.ver.outputs.version }}" \
+            --notes-file notes.md
+
+      - name: Publish to npm
+        env:
+          NODE_AUTH_TOKEN: ${{ secrets.NPM_TOKEN }}
+        run: |
+          bash scripts/pack-npm.sh "${{ steps.ver.outputs.version }}"
+          # Platform packages first, then the main shim (which depends on them).
+          for dir in release/npm/codegraph-* release/npm/main; do
+            echo "publishing $dir"
+            ( cd "$dir" && npm publish --access public )
+          done