fix: count file-level tracked yaml and twig as indexed (#357)

__tests__/extraction.test.ts

@@ -3226,6 +3226,38 @@ export function multiply(a: number, b: number): number {
 
     cg.close();
   });
+
+  it('should count file-level tracked YAML files as indexed', async () => {
+    fs.writeFileSync(path.join(tempDir, 'app.yaml'), 'name: test\n');
+    fs.writeFileSync(path.join(tempDir, 'routes.yml'), 'route: value\n');
+
+    const cg = CodeGraph.initSync(tempDir);
+    const result = await cg.indexAll();
+
+    expect(result.success).toBe(true);
+    expect(result.filesIndexed).toBe(2);
+    expect(result.filesSkipped).toBe(0);
+    expect(cg.getFiles().map((f) => f.path).sort()).toEqual(['app.yaml', 'routes.yml']);
+
+    cg.close();
+  });
+
+  it('should count file-level tracked YAML/Twig files as indexed in indexFiles()', async () => {
+    fs.writeFileSync(path.join(tempDir, 'app.yaml'), 'name: test\n');
+    fs.writeFileSync(path.join(tempDir, 'view.twig'), '{{ title }}\n');
+
+    const cg = CodeGraph.initSync(tempDir);
+    const result = await cg.indexFiles(['app.yaml', 'view.twig']);
+
+    expect(result.success).toBe(true);
+    expect(result.filesIndexed).toBe(2);
+    expect(result.filesSkipped).toBe(0);
+
+    const tracked = cg.getFiles().map((f) => `${f.path}:${f.language}`).sort();
+    expect(tracked).toEqual(['app.yaml:yaml', 'view.twig:twig']);
+
+    cg.close();
+  });
 });
 
 describe('Path Normalization', () => {

src/extraction/index.ts

@@ -941,11 +941,19 @@ export class ExtractionOrchestrator {
           totalEdges += result.edges.length;
         } else if (result.errors.some((e) => e.severity === 'error')) {
           filesErrored++;
+        } else {
+          // Files with no symbols but no errors (e.g. yaml, twig) are tracked
+          // at the file level — count them as indexed so the CLI doesn't
+          // misleadingly report "No files found to index".
+          const lang = detectLanguage(filePath, content);
+          if (lang === 'yaml' || lang === 'twig') {
+            filesIndexed++;
           } else {
             filesSkipped++;
           }
         }
       }
+    }
 
     // Report 100% so the progress bar doesn't hang at 99%
     onProgress?.({
@@ -1107,10 +1115,15 @@ export class ExtractionOrchestrator {
         totalEdges += result.edges.length;
       } else if (result.errors.some((e) => e.severity === 'error')) {
         filesErrored++;
+      } else {
+        const tracked = this.queries.getFileByPath(filePath);
+        if (tracked && (tracked.language === 'yaml' || tracked.language === 'twig')) {
+          filesIndexed++;
         } else {
           filesSkipped++;
         }
       }
+    }
 
     return {
       success: filesIndexed > 0 || errors.filter((e) => e.severity === 'error').length === 0,