fix(explore): recognize Wrangler-style "generated by … by running" banners (CG-25)

Cloudflare Wrangler's `worker-configuration.d.ts` (~12k lines of ambient
types) carried no banner any GENERATED_CONTENT_PATTERNS entry matched:
every existing marker requires `DO NOT EDIT`, a standalone `@generated`,
`<auto-generated>`, or the literal `automatically/auto-generated by`
phrasings. Wrangler emits a bare `Generated by Wrangler by running
`wrangler types``, so the file ranked with pen 1.00 and won 79.4% of an
explore envelope on generic token overlap alone (CG-24).

The discriminator is the reproduction instruction, not the word
"generated": the banner must name a tool AND then say `by running`, i.e.
two separate "by" clauses. That keeps prose out — "the nightly summary is
generated by running the ETL job" has only one — while catching every
CLI-driven emitter that tells you how to regenerate.

Precision swept over 441,856 files across the whole local source tree: 5
hits, all genuine Wrangler output, no false positives.

Isolated before/after on the CG-24 repro (same query, same index, only
the `files.generated` flag differing):

  before  pen 1.00  score 115.0  share 79.4%  3 files rendered
  after   pen 0.30  score  35.4  share 21.1%  4 files rendered

The new pattern stays in the existing table position, below the header
window the detector scans, so the module still does not classify itself.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>

CHANGELOG.md

@@ -21,6 +21,7 @@ and adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 - Files only weakly related to your question now come back as a name, symbol and line number instead of spending the answer on their source — name one of them in a follow-up `codegraph_explore` to get it back in full. (#1500)
 - A generated CRUD or protobuf layer no longer crowds out the hand-written code sitting beside it: generated files are now recognized by the `// Code generated by … DO NOT EDIT.` style banner written at the top of the file, not just by a filename that looks generated. Re-index after upgrading to pick up the new detection. (#1500)
 - Test and spec files in a repository's top-level `test/` or `spec/` directory are now recognized as such, so they no longer take room from the code you asked about. (#1500)
+- Generated type-declaration files that announce themselves with a "Generated by … by running …" banner — Cloudflare Wrangler's `worker-configuration.d.ts` is the common one — are now recognized as generated. Previously a file like that could take most of a `codegraph_explore` answer on nothing more than a few common words, pushing the hand-written code you asked about out of the response entirely. Re-index after upgrading to pick up the new detection.
 - A CodeGraph process that gets force-killed — by the stuck-process watchdog, a crash, or the OS — no longer leaves the database's write-ahead log behind to grow without bound. Previously each killed session stacked more data onto the same log file and nothing ever shrank it, which on machines where sessions were killed regularly could quietly eat tens of gigabytes of disk. The log is now capped, and any oversized leftover is reclaimed automatically the next time the project is opened. Thanks @tiendungdev for the exceptional Windows report that pinned this down. (#1431)
 - The background server's watchdog no longer kills a healthy server that is just waiting on a slow disk: like indexing already does, it now checks whether the database files are still making progress before concluding the process is stuck. Fewer spurious kills also means fewer leftover write-ahead logs. (#1431)
 - `codegraph status` now shows the write-ahead log's size next to the database size and warns when killed sessions have left it oversized, and every line in the background server's log now carries a timestamp so kills and restarts can be placed in time. (#1431)